3D structure

PDB id
8BHN (explore in PDB, NAKB, or RNA 3D Hub)
Description
Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and m6AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site
Experimental method
ELECTRON MICROSCOPY
Resolution
2.85 Å

Loop

Sequence
GUGCCAG*CGGUAAUAC
Length
16 nucleotides
Bulged bases
8BHN|1|2|A|532, 8BHN|1|2|U|534
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8BHN_135 not in the Motif Atlas
Homologous match to IL_4LFB_021
Geometric discrepancy: 0.3882
The information below is about IL_4LFB_021
Detailed Annotation
Kink-turn related
Broad Annotation
No text annotation
Motif group
IL_54177.4
Basepair signature
cWW-cSW-tWH-L-R-L-R-tHS-cWW
Number of instances in this motif group
4

Unit IDs

8BHN|1|2|G|515
8BHN|1|2|U|516
8BHN|1|2|G|517
8BHN|1|2|C|518
8BHN|1|2|C|519
8BHN|1|2|A|520
8BHN|1|2|G|521
*
8BHN|1|2|C|528
8BHN|1|2|G|529
8BHN|1|2|G|530
8BHN|1|2|U|531
8BHN|1|2|A|532
8BHN|1|2|A|533
8BHN|1|2|U|534
8BHN|1|2|A|535
8BHN|1|2|C|536

Current chains

Chain 2
16S rRNA RRSB-RRNA

Nearby chains

Chain 3
mRNA
Chain 5
Transfer RNA; tRNA
Chain g
30S ribosomal protein S3
Chain h
30S ribosomal protein S4
Chain p
30S ribosomal protein S12

Coloring options:


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