IL_8BHN_153

3D structure

PDB id

8BHN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and m6AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.85 Å

Loop

Sequence

CAU*GUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BHN_153 not in the Motif Atlas

Geometric match to IL_6F4H_001

Geometric discrepancy: 0.1938

The information below is about IL_6F4H_001

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_70707.3

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

70

Unit IDs

8BHN|1|2|C|948
8BHN|1|2|A|949
8BHN|1|2|U|950
*
8BHN|1|2|G|1231
8BHN|1|2|U|1232
8BHN|1|2|G|1233

Current chains

Chain 2

16S rRNA RRSB-RRNA

Nearby chains

Chain 4

Transfer RNA; tRNA

Chain m

30S ribosomal protein S9

Chain q

30S ribosomal protein S13