IL_8BHP_026
3D structure
- PDB id
- 8BHP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and m6AAA mRNA codon in the A-site after uncompleted di-peptide formation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.37 Å
Loop
- Sequence
- GGGGUAG*CGAAUAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BHP_026 not in the Motif Atlas
- Geometric match to IL_5J7L_270
- Geometric discrepancy: 0.1107
- The information below is about IL_5J7L_270
- Detailed Annotation
- 7x7 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_29198.2
- Basepair signature
- cWW-cWW-L-R-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
8BHP|1|0|G|856
8BHP|1|0|G|857
8BHP|1|0|G|858
8BHP|1|0|G|859
8BHP|1|0|U|860
8BHP|1|0|A|861
8BHP|1|0|G|862
*
8BHP|1|0|C|915
8BHP|1|0|G|916
8BHP|1|0|A|917
8BHP|1|0|A|918
8BHP|1|0|U|919
8BHP|1|0|A|920
8BHP|1|0|C|921
Current chains
- Chain 0
- 23S rRNA RRLG-RRNA
Nearby chains
- Chain 1
- 5S ribosomal RNA; 5S rRNA
- Chain J
- 50S ribosomal protein L16
- Chain T
- 50S ribosomal protein L27
- Chain W
- 50S ribosomal protein L30
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