IL_8BHP_063

3D structure

PDB id

8BHP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and m6AAA mRNA codon in the A-site after uncompleted di-peptide formation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.37 Å

Loop

Sequence

UGAGG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BHP_063 not in the Motif Atlas

Homologous match to IL_5J7L_310

Geometric discrepancy: 0.1328

The information below is about IL_5J7L_310

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

19

Unit IDs

8BHP|1|0|U|1720
8BHP|1|0|G|1721
8BHP|1|0|A|1722
8BHP|1|0|G|1723
8BHP|1|0|G|1724
*
8BHP|1|0|U|1736
8BHP|1|0|G|1737
8BHP|1|0|G|1738
8BHP|1|0|A|1739
8BHP|1|0|G|1740

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains