IL_8BHP_120

3D structure

PDB id

8BHP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and m6AAA mRNA codon in the A-site after uncompleted di-peptide formation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.37 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

8BHP|1|2|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BHP_120 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.1483

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

8BHP|1|2|G|147
8BHP|1|2|G|148
8BHP|1|2|A|149
8BHP|1|2|U|150
8BHP|1|2|A|151
8BHP|1|2|A|152
8BHP|1|2|C|153
*
8BHP|1|2|G|168
8BHP|1|2|C|169
8BHP|1|2|U|170
8BHP|1|2|A|171
8BHP|1|2|A|172
8BHP|1|2|U|173
8BHP|1|2|A|174
8BHP|1|2|C|175

Current chains

Chain 2

16S rRNA RRSB-RRNA

Nearby chains

Chain x

30S ribosomal protein S20