3D structure

PDB id
8BHP (explore in PDB, NAKB, or RNA 3D Hub)
Description
Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and m6AAA mRNA codon in the A-site after uncompleted di-peptide formation
Experimental method
ELECTRON MICROSCOPY
Resolution
2.37 Å

Loop

Sequence
GAUUAG*CGACGAUC
Length
14 nucleotides
Bulged bases
8BHP|1|2|U|244, 8BHP|1|2|C|280
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8BHP_122 not in the Motif Atlas
Homologous match to IL_5J7L_014
Geometric discrepancy: 0.1352
The information below is about IL_5J7L_014
Detailed Annotation
Kink-turn with non-sequential stacking
Broad Annotation
Kink-turn
Motif group
IL_46174.3
Basepair signature
cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
Number of instances in this motif group
5

Unit IDs

8BHP|1|2|G|242
8BHP|1|2|A|243
8BHP|1|2|U|244
8BHP|1|2|U|245
8BHP|1|2|A|246
8BHP|1|2|G|247
*
8BHP|1|2|C|277
8BHP|1|2|G|278
8BHP|1|2|A|279
8BHP|1|2|C|280
8BHP|1|2|G|281
8BHP|1|2|A|282
8BHP|1|2|U|283
8BHP|1|2|C|284

Current chains

Chain 2
16S rRNA RRSB-RRNA

Nearby chains

Chain p
30S ribosomal protein S12
Chain u
30S ribosomal protein S17

Coloring options:


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