3D structure

PDB id
8BHP (explore in PDB, NAKB, or RNA 3D Hub)
Description
Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and m6AAA mRNA codon in the A-site after uncompleted di-peptide formation
Experimental method
ELECTRON MICROSCOPY
Resolution
2.37 Å

Loop

Sequence
CGGCUAAC*GG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8BHP_132 not in the Motif Atlas
Homologous match to IL_4LFB_020
Geometric discrepancy: 0.114
The information below is about IL_4LFB_020
Detailed Annotation
SSU/LSU pseudoknot
Broad Annotation
No text annotation
Motif group
IL_41203.4
Basepair signature
cWW-L-cWW-L-L-R-cSH
Number of instances in this motif group
11

Unit IDs

8BHP|1|2|C|504
8BHP|1|2|G|505
8BHP|1|2|G|506
8BHP|1|2|C|507
8BHP|1|2|U|508
8BHP|1|2|A|509
8BHP|1|2|A|510
8BHP|1|2|C|511
*
8BHP|1|2|G|540
8BHP|1|2|G|541

Current chains

Chain 2
16S rRNA RRSB-RRNA

Nearby chains

Chain h
30S ribosomal protein S4
Chain p
30S ribosomal protein S12

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2136 s
Application loaded.