3D structure

PDB id
8BHP (explore in PDB, NAKB, or RNA 3D Hub)
Description
Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and m6AAA mRNA codon in the A-site after uncompleted di-peptide formation
Experimental method
ELECTRON MICROSCOPY
Resolution
2.37 Å

Loop

Sequence
UAGAG*UGGA
Length
9 nucleotides
Bulged bases
8BHP|1|2|A|665
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8BHP_141 not in the Motif Atlas
Homologous match to IL_5J7L_033
Geometric discrepancy: 0.1384
The information below is about IL_5J7L_033
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_85033.2
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
35

Unit IDs

8BHP|1|2|U|662
8BHP|1|2|A|663
8BHP|1|2|G|664
8BHP|1|2|A|665
8BHP|1|2|G|666
*
8BHP|1|2|U|740
8BHP|1|2|G|741
8BHP|1|2|G|742
8BHP|1|2|A|743

Current chains

Chain 2
16S rRNA RRSB-RRNA

Nearby chains

Chain j
30S ribosomal protein S6
Chain s
30S ribosomal protein S15
Chain v
30S ribosomal protein S18

Coloring options:


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