IL_8BHP_155

3D structure

PDB id

8BHP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and m6AAA mRNA codon in the A-site after uncompleted di-peptide formation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.37 Å

Loop

Sequence

CUGCAU*AUGG

Length

10 nucleotides

Bulged bases

8BHP|1|2|C|1054

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BHP_155 not in the Motif Atlas

Geometric match to IL_4V88_473

Geometric discrepancy: 0.3474

The information below is about IL_4V88_473

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_36174.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

8BHP|1|2|C|1051
8BHP|1|2|U|1052
8BHP|1|2|G|1053
8BHP|1|2|C|1054
8BHP|1|2|A|1055
8BHP|1|2|U|1056
*
8BHP|1|2|A|1204
8BHP|1|2|U|1205
8BHP|1|2|G|1206
8BHP|1|2|G|1207

Current chains

Chain 2

16S rRNA RRSB-RRNA

Nearby chains

Chain 3

mRNA

Chain g

30S ribosomal protein S3

Chain n

30S ribosomal protein S10

Chain r

30S ribosomal protein S14