IL_8BHP_179

3D structure

PDB id

8BHP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and m6AAA mRNA codon in the A-site after uncompleted di-peptide formation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.37 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BHP_179 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.1176

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8BHP|1|0|U|1851
8BHP|1|0|U|1852
8BHP|1|0|A|1853
8BHP|1|0|A|1854
8BHP|1|0|U|1855
8BHP|1|0|U|1856
8BHP|1|0|G|1857
8BHP|1|0|A|1858
8BHP|1|0|U|1859
8BHP|1|0|G|1860
*
8BHP|1|0|U|1882
8BHP|1|0|U|1883
8BHP|1|0|G|1884
8BHP|1|0|A|1885
8BHP|1|0|U|1886
8BHP|1|0|C|1887
8BHP|1|0|G|1888
8BHP|1|0|A|1889
8BHP|1|0|A|1890
8BHP|1|0|G|1891

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains