IL_8BIL_007

3D structure

PDB id

8BIL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiation complex of the E. coli 70S ribosome with mRNA containing AAA codon in the A-site.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.04 Å

Loop

Sequence

CCAGUAG*CGAACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BIL_007 not in the Motif Atlas

Homologous match to IL_5J7L_251

Geometric discrepancy: 0.1152

The information below is about IL_5J7L_251

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_26307.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

8BIL|1|0|C|239
8BIL|1|0|C|240
8BIL|1|0|A|241
8BIL|1|0|G|242
8BIL|1|0|U|243
8BIL|1|0|A|244
8BIL|1|0|G|245
*
8BIL|1|0|C|253
8BIL|1|0|G|254
8BIL|1|0|A|255
8BIL|1|0|A|256
8BIL|1|0|C|257
8BIL|1|0|G|258

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain I

50S ribosomal protein L15

Chain d

50S ribosomal protein L35