IL_8BIL_036

3D structure

PDB id

8BIL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiation complex of the E. coli 70S ribosome with mRNA containing AAA codon in the A-site.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.04 Å

Loop

Sequence

UCCCAAAG*CA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BIL_036 not in the Motif Atlas

Geometric match to IL_4WF9_037

Geometric discrepancy: 0.1448

The information below is about IL_4WF9_037

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.4

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

11

Unit IDs

8BIL|1|0|U|1004
8BIL|1|0|C|1005
8BIL|1|0|C|1006
8BIL|1|0|C|1007
8BIL|1|0|A|1008
8BIL|1|0|A|1009
8BIL|1|0|A|1010
8BIL|1|0|G|1011
*
8BIL|1|0|C|1150
8BIL|1|0|A|1151

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain G

50S ribosomal protein L13

Chain N

50S ribosomal protein L20