IL_8BIL_062

3D structure

PDB id

8BIL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiation complex of the E. coli 70S ribosome with mRNA containing AAA codon in the A-site.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.04 Å

Loop

Sequence

ACUAGG*CUGU

Length

10 nucleotides

Bulged bases

8BIL|1|0|G|1992

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BIL_062 not in the Motif Atlas

Geometric match to IL_4WF9_065

Geometric discrepancy: 0.106

The information below is about IL_4WF9_065

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_28217.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

10

Unit IDs

8BIL|1|0|A|1669
8BIL|1|0|C|1670
8BIL|1|0|U|1671
8BIL|1|0|A|1672
8BIL|1|0|G|1673
8BIL|1|0|G|1674
*
8BIL|1|0|C|1990
8BIL|1|0|U|1991
8BIL|1|0|G|1992
8BIL|1|0|U|1993

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain B

50S ribosomal protein L3

Chain H

50S ribosomal protein L14