IL_8BIL_097

3D structure

PDB id

8BIL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiation complex of the E. coli 70S ribosome with mRNA containing AAA codon in the A-site.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.04 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BIL_097 not in the Motif Atlas

Geometric match to IL_7A0S_094

Geometric discrepancy: 0.089

The information below is about IL_7A0S_094

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.4

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

8BIL|1|0|C|2652
8BIL|1|0|U|2653
8BIL|1|0|A|2654
8BIL|1|0|G|2655
8BIL|1|0|U|2656
8BIL|1|0|A|2657
8BIL|1|0|C|2658
*
8BIL|1|0|G|2663
8BIL|1|0|G|2664
8BIL|1|0|A|2665
8BIL|1|0|C|2666
8BIL|1|0|C|2667
8BIL|1|0|G|2668

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain E

50S ribosomal protein L6