IL_8BIL_122

3D structure

PDB id

8BIL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiation complex of the E. coli 70S ribosome with mRNA containing AAA codon in the A-site.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.04 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

8BIL|1|2|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BIL_122 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.1302

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

8BIL|1|2|G|147
8BIL|1|2|G|148
8BIL|1|2|A|149
8BIL|1|2|U|150
8BIL|1|2|A|151
8BIL|1|2|A|152
8BIL|1|2|C|153
*
8BIL|1|2|G|168
8BIL|1|2|C|169
8BIL|1|2|U|170
8BIL|1|2|A|171
8BIL|1|2|A|172
8BIL|1|2|U|173
8BIL|1|2|A|174
8BIL|1|2|C|175

Current chains

Chain 2

16S rRNA RRSB-RRNA

Nearby chains

Chain x

30S ribosomal protein S20