IL_8BIL_124

3D structure

PDB id

8BIL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiation complex of the E. coli 70S ribosome with mRNA containing AAA codon in the A-site.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.04 Å

Loop

Sequence

GAUUAG*CGACGAUC

Length

14 nucleotides

Bulged bases

8BIL|1|2|U|244, 8BIL|1|2|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BIL_124 not in the Motif Atlas

Homologous match to IL_5J7L_014

Geometric discrepancy: 0.126

The information below is about IL_5J7L_014

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

8BIL|1|2|G|242
8BIL|1|2|A|243
8BIL|1|2|U|244
8BIL|1|2|U|245
8BIL|1|2|A|246
8BIL|1|2|G|247
*
8BIL|1|2|C|277
8BIL|1|2|G|278
8BIL|1|2|A|279
8BIL|1|2|C|280
8BIL|1|2|G|281
8BIL|1|2|A|282
8BIL|1|2|U|283
8BIL|1|2|C|284

Current chains

Chain 2

16S rRNA RRSB-RRNA

Nearby chains

Chain p

30S ribosomal protein S12

Chain u

30S ribosomal protein S17