IL_8BIL_134

3D structure

PDB id

8BIL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiation complex of the E. coli 70S ribosome with mRNA containing AAA codon in the A-site.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.04 Å

Loop

Sequence

CGGCUAAC*GG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BIL_134 not in the Motif Atlas

Homologous match to IL_4LFB_020

Geometric discrepancy: 0.0983

The information below is about IL_4LFB_020

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_11411.1

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

12

Unit IDs

8BIL|1|2|C|504
8BIL|1|2|G|505
8BIL|1|2|G|506
8BIL|1|2|C|507
8BIL|1|2|U|508
8BIL|1|2|A|509
8BIL|1|2|A|510
8BIL|1|2|C|511
*
8BIL|1|2|G|540
8BIL|1|2|G|541

Current chains

Chain 2

16S rRNA RRSB-RRNA

Nearby chains

Chain h

30S ribosomal protein S4

Chain p

30S ribosomal protein S12