IL_8BIL_171

3D structure

PDB id

8BIL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiation complex of the E. coli 70S ribosome with mRNA containing AAA codon in the A-site.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.04 Å

Loop

Sequence

CAC*GAAG

Length

7 nucleotides

Bulged bases

8BIL|1|2|A|1493

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BIL_171 not in the Motif Atlas

Geometric match to IL_5J7L_009

Geometric discrepancy: 0.3214

The information below is about IL_5J7L_009

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

8BIL|1|2|C|1407
8BIL|1|2|A|1408
8BIL|1|2|C|1409
*
8BIL|1|2|G|1491
8BIL|1|2|A|1492
8BIL|1|2|A|1493
8BIL|1|2|G|1494

Current chains

Chain 2

16S rRNA RRSB-RRNA

Nearby chains

Chain 0

Large subunit ribosomal RNA; LSU rRNA

Chain 3

mRNA

Chain p

30S ribosomal protein S12