IL_8BIM_017

3D structure

PDB id

8BIM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiation complex of the E. coli 70S ribosome with mRNA containing AAm6A codon in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.04 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

8BIM|1|0|G|801, 8BIM|1|0|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BIM_017 not in the Motif Atlas

Homologous match to IL_5J7L_260

Geometric discrepancy: 0.1008

The information below is about IL_5J7L_260

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

8BIM|1|0|G|674
8BIM|1|0|A|675
8BIM|1|0|A|676
8BIM|1|0|A|677
8BIM|1|0|C|678
*
8BIM|1|0|G|799
8BIM|1|0|A|800
8BIM|1|0|G|801
8BIM|1|0|A|802
8BIM|1|0|U|803
8BIM|1|0|A|804
8BIM|1|0|G|805
8BIM|1|0|C|806

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain C

50S ribosomal protein L4

Chain I

50S ribosomal protein L15