3D structure

PDB id
8BIM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Initiation complex of the E. coli 70S ribosome with mRNA containing AAm6A codon in the A-site
Experimental method
ELECTRON MICROSCOPY
Resolution
2.04 Å

Loop

Sequence
UC*GUUA
Length
6 nucleotides
Bulged bases
8BIM|1|0|U|931
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8BIM_025 not in the Motif Atlas
Homologous match to IL_5J7L_268
Geometric discrepancy: 0.1463
The information below is about IL_5J7L_268
Detailed Annotation
Stack outside cWW
Broad Annotation
No text annotation
Motif group
IL_56987.1
Basepair signature
cWW-L-cWW
Number of instances in this motif group
3

Unit IDs

8BIM|1|0|U|847
8BIM|1|0|C|848
*
8BIM|1|0|G|930
8BIM|1|0|U|931
8BIM|1|0|U|932
8BIM|1|0|A|933

Current chains

Chain 0
23S rRNA RRLG-RRNA

Nearby chains

Chain W
50S ribosomal protein L30

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.7846 s