IL_8BIM_077

3D structure

PDB id

8BIM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiation complex of the E. coli 70S ribosome with mRNA containing AAm6A codon in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.04 Å

Loop

Sequence

AA*UACU

Length

6 nucleotides

Bulged bases

8BIM|1|0|A|2439

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BIM_077 not in the Motif Atlas

Homologous match to IL_7RQB_081

Geometric discrepancy: 0.0919

The information below is about IL_7RQB_081

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_42622.4

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

33

Unit IDs

8BIM|1|0|A|2070
8BIM|1|0|A|2071
*
8BIM|1|0|U|2438
8BIM|1|0|A|2439
8BIM|1|0|C|2440
8BIM|1|0|U|2441

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain 4

Transfer RNA; tRNA

Chain A

50S ribosomal protein L2