IL_8BIM_098

3D structure

PDB id

8BIM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiation complex of the E. coli 70S ribosome with mRNA containing AAm6A codon in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.04 Å

Loop

Sequence

UGUUC*GGUAG

Length

10 nucleotides

Bulged bases

8BIM|1|0|U|2689, 8BIM|1|0|U|2690

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BIM_098 not in the Motif Atlas

Homologous match to IL_4WF9_102

Geometric discrepancy: 0.1105

The information below is about IL_4WF9_102

Detailed Annotation

UAA/GAN related, with intercalation

Broad Annotation

UAA/GAN related, with intercalation

Motif group

IL_23774.1

Basepair signature

cWW-L-R-L-tHS-cWW

Number of instances in this motif group

11

Unit IDs

8BIM|1|0|U|2687
8BIM|1|0|G|2688
8BIM|1|0|U|2689
8BIM|1|0|U|2690
8BIM|1|0|C|2691
*
8BIM|1|0|G|2718
8BIM|1|0|G|2719
8BIM|1|0|U|2720
8BIM|1|0|A|2721
8BIM|1|0|G|2722

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain B

50S ribosomal protein L3

Chain K

50S ribosomal protein L17

Chain M

50S ribosomal protein L19