IL_8BIM_123

3D structure

PDB id

8BIM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiation complex of the E. coli 70S ribosome with mRNA containing AAm6A codon in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.04 Å

Loop

Sequence

GAUUAG*CGACGAUC

Length

14 nucleotides

Bulged bases

8BIM|1|2|U|244, 8BIM|1|2|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BIM_123 not in the Motif Atlas

Homologous match to IL_5J7L_014

Geometric discrepancy: 0.1272

The information below is about IL_5J7L_014

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

8BIM|1|2|G|242
8BIM|1|2|A|243
8BIM|1|2|U|244
8BIM|1|2|U|245
8BIM|1|2|A|246
8BIM|1|2|G|247
*
8BIM|1|2|C|277
8BIM|1|2|G|278
8BIM|1|2|A|279
8BIM|1|2|C|280
8BIM|1|2|G|281
8BIM|1|2|A|282
8BIM|1|2|U|283
8BIM|1|2|C|284

Current chains

Chain 2

16S rRNA RRSB-RRNA

Nearby chains

Chain p

30S ribosomal protein S12

Chain u

30S ribosomal protein S17