IL_8BIM_142

3D structure

PDB id

8BIM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiation complex of the E. coli 70S ribosome with mRNA containing AAm6A codon in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.04 Å

Loop

Sequence

UAGAG*UGGA

Length

9 nucleotides

Bulged bases

8BIM|1|2|A|665

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BIM_142 not in the Motif Atlas

Homologous match to IL_5J7L_033

Geometric discrepancy: 0.1172

The information below is about IL_5J7L_033

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

8BIM|1|2|U|662
8BIM|1|2|A|663
8BIM|1|2|G|664
8BIM|1|2|A|665
8BIM|1|2|G|666
*
8BIM|1|2|U|740
8BIM|1|2|G|741
8BIM|1|2|G|742
8BIM|1|2|A|743

Current chains

Chain 2

16S rRNA RRSB-RRNA

Nearby chains

Chain j

30S ribosomal protein S6

Chain s

30S ribosomal protein S15

Chain v

30S ribosomal protein S18