IL_8BIM_143
3D structure
- PDB id
- 8BIM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Initiation complex of the E. coli 70S ribosome with mRNA containing AAm6A codon in the A-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.04 Å
Loop
- Sequence
- AGAAUU*AGGAAU
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BIM_143 not in the Motif Atlas
- Homologous match to IL_4LFB_030
- Geometric discrepancy: 0.135
- The information below is about IL_4LFB_030
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_04668.2
- Basepair signature
- cWW-cWW-cWW-L-R-L-R-cWW
- Number of instances in this motif group
- 8
Unit IDs
8BIM|1|2|A|673
8BIM|1|2|G|674
8BIM|1|2|A|675
8BIM|1|2|A|676
8BIM|1|2|U|677
8BIM|1|2|U|678
*
8BIM|1|2|A|712
8BIM|1|2|G|713
8BIM|1|2|G|714
8BIM|1|2|A|715
8BIM|1|2|A|716
8BIM|1|2|U|717
Current chains
- Chain 2
- 16S rRNA RRSB-RRNA
Nearby chains
- Chain A
- 50S ribosomal protein L2
- Chain j
- 30S ribosomal protein S6
- Chain o
- 30S ribosomal protein S11
- Chain v
- 30S ribosomal protein S18
- Chain y
- 30S ribosomal protein S21
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