IL_8BIM_180

3D structure

PDB id

8BIM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiation complex of the E. coli 70S ribosome with mRNA containing AAm6A codon in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.04 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BIM_180 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.1215

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8BIM|1|0|U|1851
8BIM|1|0|U|1852
8BIM|1|0|A|1853
8BIM|1|0|A|1854
8BIM|1|0|U|1855
8BIM|1|0|U|1856
8BIM|1|0|G|1857
8BIM|1|0|A|1858
8BIM|1|0|U|1859
8BIM|1|0|G|1860
*
8BIM|1|0|U|1882
8BIM|1|0|U|1883
8BIM|1|0|G|1884
8BIM|1|0|A|1885
8BIM|1|0|U|1886
8BIM|1|0|C|1887
8BIM|1|0|G|1888
8BIM|1|0|A|1889
8BIM|1|0|A|1890
8BIM|1|0|G|1891

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains