3D structure

PDB id
8BIP (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a yeast 80S ribosome-bound N-Acetyltransferase B complex
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CGU*AGUG
Length
7 nucleotides
Bulged bases
8BIP|1|1|G|1429
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8BIP_056 not in the Motif Atlas
Homologous match to IL_8C3A_061
Geometric discrepancy: 0.0682
The information below is about IL_8C3A_061
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_73554.3
Basepair signature
cWW-cWS-cWW
Number of instances in this motif group
10

Unit IDs

8BIP|1|1|C|1376
8BIP|1|1|G|1377
8BIP|1|1|U|1378
*
8BIP|1|1|A|1428
8BIP|1|1|G|1429
8BIP|1|1|U|1430
8BIP|1|1|G|1431

Current chains

Chain 1
25S rRNA

Nearby chains

Chain C3
5.8S ribosomal RNA; 5.8S rRNA
Chain LC
60S ribosomal protein L4-A
Chain La
60S ribosomal protein L28
Chain Le
60S ribosomal protein L32

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1626 s