3D structure

PDB id
8BIP (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a yeast 80S ribosome-bound N-Acetyltransferase B complex
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
GAUA*UGC
Length
7 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8BIP_064 not in the Motif Atlas
Homologous match to IL_8C3A_070
Geometric discrepancy: 0.2476
The information below is about IL_8C3A_070
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_15698.1
Basepair signature
cWW-tSH-cSH-cWW
Number of instances in this motif group
9

Unit IDs

8BIP|1|1|G|1618
8BIP|1|1|A|1619
8BIP|1|1|U|1620
8BIP|1|1|A|1621
*
8BIP|1|1|U|1824
8BIP|1|1|G|1825
8BIP|1|1|C|1826

Current chains

Chain 1
25S rRNA

Nearby chains

Chain C3
5.8S ribosomal RNA; 5.8S rRNA
Chain Lk
60S ribosomal protein L38

Coloring options:


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