IL_8BIP_071

3D structure

PDB id

8BIP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast 80S ribosome-bound N-Acetyltransferase B complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUAAC*GGAAGA

Length

11 nucleotides

Bulged bases

8BIP|1|1|G|1751

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BIP_071 not in the Motif Atlas

Homologous match to IL_8C3A_077

Geometric discrepancy: 0.0844

The information below is about IL_8C3A_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_69313.1

Basepair signature

cWW-tWH-tHH-tHS-cWW

Number of instances in this motif group

2

Unit IDs

8BIP|1|1|U|1694
8BIP|1|1|U|1695
8BIP|1|1|A|1696
8BIP|1|1|A|1697
8BIP|1|1|C|1698
*
8BIP|1|1|G|1747
8BIP|1|1|G|1748
8BIP|1|1|A|1749
8BIP|1|1|A|1750
8BIP|1|1|G|1751
8BIP|1|1|A|1752

Current chains

Chain 1

25S rRNA

Nearby chains

Chain Lg

60S ribosomal protein L34-A

Chain Lk

60S ribosomal protein L38