IL_8BIP_094

3D structure

PDB id

8BIP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast 80S ribosome-bound N-Acetyltransferase B complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

8BIP|1|1|A|2281, 8BIP|1|1|C|2287, 8BIP|1|1|C|2306

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BIP_094 not in the Motif Atlas

Geometric match to IL_5TBW_090

Geometric discrepancy: 0.1081

The information below is about IL_5TBW_090

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

8BIP|1|1|C|2277
8BIP|1|1|C|2278
8BIP|1|1|A|2279
8BIP|1|1|A|2280
8BIP|1|1|A|2281
8BIP|1|1|U|2282
8BIP|1|1|G|2283
8BIP|1|1|C|2284
8BIP|1|1|C|2285
8BIP|1|1|U|2286
8BIP|1|1|C|2287
8BIP|1|1|G|2288
*
8BIP|1|1|C|2304
8BIP|1|1|G|2305
8BIP|1|1|C|2306
8BIP|1|1|G|2307

Current chains

Chain 1

25S rRNA

Nearby chains

Chain Ln

60S ribosomal protein L41-A