IL_8BJQ_051
3D structure
- PDB id
- 8BJQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a yeast 80S ribosome-bound N-Acetyltransferase B complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GACACCACAAAA*UGAAAAUGGAUGGCGC
- Length
- 28 nucleotides
- Bulged bases
- 8BJQ|1|1|C|1196, 8BJQ|1|1|A|1302
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BJQ_051 not in the Motif Atlas
- Geometric match to IL_5TBW_052
- Geometric discrepancy: 0.0725
- The information below is about IL_5TBW_052
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_53762.1
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
8BJQ|1|1|G|1194
8BJQ|1|1|A|1195
8BJQ|1|1|C|1196
8BJQ|1|1|A|1197
8BJQ|1|1|C|1198
8BJQ|1|1|C|1199
8BJQ|1|1|A|1200
8BJQ|1|1|C|1201
8BJQ|1|1|A|1202
8BJQ|1|1|A|1203
8BJQ|1|1|A|1204
8BJQ|1|1|A|1205
*
8BJQ|1|1|U|1299
8BJQ|1|1|G|1300
8BJQ|1|1|A|1301
8BJQ|1|1|A|1302
8BJQ|1|1|A|1303
8BJQ|1|1|A|1304
8BJQ|1|1|U|1305
8BJQ|1|1|G|1306
8BJQ|1|1|G|1307
8BJQ|1|1|A|1308
8BJQ|1|1|U|1309
8BJQ|1|1|G|1310
8BJQ|1|1|G|1311
8BJQ|1|1|C|1312
8BJQ|1|1|G|1313
8BJQ|1|1|C|1314
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain C4
- 5S ribosomal RNA; 5S rRNA
- Chain LB
- 60S ribosomal protein L3
- Chain LF
- 60S ribosomal protein L7-A
- Chain LI
- 60S ribosomal protein L10
- Chain LO
- 60S ribosomal protein L16-A
- Chain Lf
- 60S ribosomal protein L33-A
- Chain Lm
- 60S ribosomal protein L40-A
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