IL_8BJQ_085

3D structure

PDB id

8BJQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast 80S ribosome-bound N-Acetyltransferase B complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAC*GAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BJQ_085 not in the Motif Atlas

Geometric match to IL_1M5K_004

Geometric discrepancy: 0.3253

The information below is about IL_1M5K_004

Detailed Annotation

Isolated cWH basepair

Broad Annotation

Isolated cWH basepair

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

8BJQ|1|1|G|1994
8BJQ|1|1|A|1995
8BJQ|1|1|C|1996
*
8BJQ|1|1|G|2025
8BJQ|1|1|A|2026
8BJQ|1|1|C|2027

Current chains

Chain 1

25S rRNA

Nearby chains

Chain D

N-terminal acetyltransferase B complex subunit MDM20