IL_8BJQ_092

3D structure

PDB id

8BJQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast 80S ribosome-bound N-Acetyltransferase B complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UCAAAGU*AACCAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BJQ_092 not in the Motif Atlas

Homologous match to IL_8C3A_093

Geometric discrepancy: 0.0816

The information below is about IL_8C3A_093

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36973.8

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW-cWW

Number of instances in this motif group

3

Unit IDs

8BJQ|1|1|U|2211
8BJQ|1|1|C|2212
8BJQ|1|1|A|2213
8BJQ|1|1|A|2214
8BJQ|1|1|A|2215
8BJQ|1|1|G|2216
8BJQ|1|1|U|2217
*
8BJQ|1|1|A|2228
8BJQ|1|1|A|2229
8BJQ|1|1|C|2230
8BJQ|1|1|C|2231
8BJQ|1|1|A|2232
8BJQ|1|1|A|2233
8BJQ|1|1|G|2234

Current chains

Chain 1

25S rRNA

Nearby chains

Chain Li

60S ribosomal protein L36-A

Chain Lo

60S ribosomal protein L42-A