IL_8BJQ_094

3D structure

PDB id

8BJQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast 80S ribosome-bound N-Acetyltransferase B complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

8BJQ|1|1|A|2281, 8BJQ|1|1|C|2287, 8BJQ|1|1|C|2306

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BJQ_094 not in the Motif Atlas

Homologous match to IL_8C3A_095

Geometric discrepancy: 0.0796

The information below is about IL_8C3A_095

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

8BJQ|1|1|C|2277
8BJQ|1|1|C|2278
8BJQ|1|1|A|2279
8BJQ|1|1|A|2280
8BJQ|1|1|A|2281
8BJQ|1|1|U|2282
8BJQ|1|1|G|2283
8BJQ|1|1|C|2284
8BJQ|1|1|C|2285
8BJQ|1|1|U|2286
8BJQ|1|1|C|2287
8BJQ|1|1|G|2288
*
8BJQ|1|1|C|2304
8BJQ|1|1|G|2305
8BJQ|1|1|C|2306
8BJQ|1|1|G|2307

Current chains

Chain 1

25S rRNA

Nearby chains

Chain Ln

60S ribosomal protein L41-A