IL_8BJQ_141
3D structure
- PDB id
- 8BJQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a yeast 80S ribosome-bound N-Acetyltransferase B complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- ACGCAGCGAAAUGCGAUACGU*AAUCU
- Length
- 26 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BJQ_141 not in the Motif Atlas
- Geometric match to IL_5TBW_144
- Geometric discrepancy: 0.0669
- The information below is about IL_5TBW_144
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_44998.1
- Basepair signature
- cWW-cWW-R-cWW-tSS-R-cWW-cWW-L-cWW-L-L-L-cWW-L-cSS-L-R-L-R
- Number of instances in this motif group
- 2
Unit IDs
8BJQ|1|C3|A|44
8BJQ|1|C3|C|45
8BJQ|1|C3|G|46
8BJQ|1|C3|C|47
8BJQ|1|C3|A|48
8BJQ|1|C3|G|49
8BJQ|1|C3|C|50
8BJQ|1|C3|G|51
8BJQ|1|C3|A|52
8BJQ|1|C3|A|53
8BJQ|1|C3|A|54
8BJQ|1|C3|U|55
8BJQ|1|C3|G|56
8BJQ|1|C3|C|57
8BJQ|1|C3|G|58
8BJQ|1|C3|A|59
8BJQ|1|C3|U|60
8BJQ|1|C3|A|61
8BJQ|1|C3|C|62
8BJQ|1|C3|G|63
8BJQ|1|C3|U|64
*
8BJQ|1|C3|A|96
8BJQ|1|C3|A|97
8BJQ|1|C3|U|98
8BJQ|1|C3|C|99
8BJQ|1|C3|U|100
Current chains
- Chain C3
- 5.8S rRNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain LX
- 60S ribosomal protein L25
- Chain Lh
- 60S ribosomal protein L35-A
- Chain Lj
- 60S ribosomal protein L37-A
- Chain Ll
- 60S ribosomal protein L39
Coloring options: