IL_8BJQ_154

3D structure

PDB id

8BJQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast 80S ribosome-bound N-Acetyltransferase B complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UCAAC*GGA

Length

8 nucleotides

Bulged bases

8BJQ|1|1|G|1514

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BJQ_154 not in the Motif Atlas

Homologous match to IL_8P9A_290

Geometric discrepancy: 0.1065

The information below is about IL_8P9A_290

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.12

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

22

Unit IDs

8BJQ|1|1|U|1501
8BJQ|1|1|C|1502
8BJQ|1|1|A|1503
8BJQ|1|1|A|1504
8BJQ|1|1|C|1505
*
8BJQ|1|1|G|1513
8BJQ|1|1|G|1514
8BJQ|1|1|A|1515

Current chains

Chain 1

25S rRNA

Nearby chains

Chain LP

60S ribosomal protein L17-A

Chain LR

60S ribosomal protein L19-A

Chain Ll

60S ribosomal protein L39