IL_8BN3_044

3D structure

PDB id

8BN3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S, ES7s delta, eIF5A, Stm1 containing

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UUCCG*UGA

Length

8 nucleotides

Bulged bases

8BN3|1|1|C|1016, 8BN3|1|1|C|1017

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BN3_044 not in the Motif Atlas

Geometric match to IL_3TD0_005

Geometric discrepancy: 0.2865

The information below is about IL_3TD0_005

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

8BN3|1|1|U|1014
8BN3|1|1|U|1015
8BN3|1|1|C|1016
8BN3|1|1|C|1017
8BN3|1|1|G|1018
*
8BN3|1|1|U|1034
8BN3|1|1|G|1035
8BN3|1|1|A|1036

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain M0

RPL10 isoform 1

Chain M1

RPL11B isoform 1

Chain SM

STM1 isoform 1