IL_8BN3_089

3D structure

PDB id

8BN3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S, ES7s delta, eIF5A, Stm1 containing

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GAAUG*CGC

Length

8 nucleotides

Bulged bases

8BN3|1|1|U|2209

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BN3_089 not in the Motif Atlas

Geometric match to IL_5TBW_087

Geometric discrepancy: 0.2977

The information below is about IL_5TBW_087

Detailed Annotation

Major groove platform with extra pair

Broad Annotation

Major groove platform

Motif group

IL_63450.5

Basepair signature

cWW-cHS-cWW-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8BN3|1|1|G|2206
8BN3|1|1|A|2207
8BN3|1|1|A|2208
8BN3|1|1|U|2209
8BN3|1|1|G|2210
*
8BN3|1|1|C|2235
8BN3|1|1|G|2236
8BN3|1|1|C|2237

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain B

60S ribosomal protein L1-A

Chain eI

Eukaryotic translation initiation factor 5A