3D structure

PDB id
8BN3 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 80S, ES7s delta, eIF5A, Stm1 containing
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
CC*GUUG
Length
6 nucleotides
Bulged bases
8BN3|1|1|U|3354, 8BN3|1|1|U|3355
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8BN3_138 not in the Motif Atlas
Homologous match to IL_8C3A_142
Geometric discrepancy: 0.2283
The information below is about IL_8C3A_142
Detailed Annotation
Multiple bulged bases
Broad Annotation
No text annotation
Motif group
IL_82107.1
Basepair signature
cWW-cWW
Number of instances in this motif group
34

Unit IDs

8BN3|1|1|C|3349
8BN3|1|1|C|3350
*
8BN3|1|1|G|3353
8BN3|1|1|U|3354
8BN3|1|1|U|3355
8BN3|1|1|G|3356

Current chains

Chain 1
25S ribosomal RNA

Nearby chains

Chain N2
60S ribosomal protein L22-A
Chain S8
40S ribosomal protein S8

Coloring options:


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