IL_8BN3_138
3D structure
- PDB id
- 8BN3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S, ES7s delta, eIF5A, Stm1 containing
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- CC*GUUG
- Length
- 6 nucleotides
- Bulged bases
- 8BN3|1|1|U|3354, 8BN3|1|1|U|3355
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BN3_138 not in the Motif Atlas
- Homologous match to IL_8C3A_142
- Geometric discrepancy: 0.2283
- The information below is about IL_8C3A_142
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_82107.1
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 34
Unit IDs
8BN3|1|1|C|3349
8BN3|1|1|C|3350
*
8BN3|1|1|G|3353
8BN3|1|1|U|3354
8BN3|1|1|U|3355
8BN3|1|1|G|3356
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain N2
- 60S ribosomal protein L22-A
- Chain S8
- 40S ribosomal protein S8
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