IL_8BN3_141

3D structure

PDB id

8BN3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S, ES7s delta, eIF5A, Stm1 containing

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UCAAA*UGACAA

Length

11 nucleotides

Bulged bases

8BN3|1|2|A|468

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BN3_141 not in the Motif Atlas

Homologous match to IL_4V88_386

Geometric discrepancy: 0.0894

The information below is about IL_4V88_386

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_37842.2

Basepair signature

cWW-cWW-L-R-cWW-cWW-R-L

Number of instances in this motif group

4

Unit IDs

8BN3|1|2|U|37
8BN3|1|2|C|38
8BN3|1|2|A|39
8BN3|1|2|A|40
8BN3|1|2|A|41
*
8BN3|1|2|U|466
8BN3|1|2|G|467
8BN3|1|2|A|468
8BN3|1|2|C|469
8BN3|1|2|A|470
8BN3|1|2|A|471

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D4

40S ribosomal protein S24-A

Chain S4

Small ribosomal subunit protein eS4A

Chain S9

Small ribosomal subunit protein uS4A