IL_8BN3_146
3D structure
- PDB id
- 8BN3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S, ES7s delta, eIF5A, Stm1 containing
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- GUUA*UUUC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BN3_146 not in the Motif Atlas
- Homologous match to IL_8C3A_399
- Geometric discrepancy: 0.0812
- The information below is about IL_8C3A_399
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_54697.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 51
Unit IDs
8BN3|1|2|G|109
8BN3|1|2|U|110
8BN3|1|2|U|111
8BN3|1|2|A|112
*
8BN3|1|2|U|302
8BN3|1|2|U|303
8BN3|1|2|U|304
8BN3|1|2|C|305
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain C1
- Small ribosomal subunit protein uS17A
- Chain S4
- Small ribosomal subunit protein eS4A
- Chain S8
- 40S ribosomal protein S8
Coloring options: