IL_8BN3_149

3D structure

PDB id

8BN3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S, ES7s delta, eIF5A, Stm1 containing

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GUAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

8BN3|1|2|U|170

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BN3_149 not in the Motif Atlas

Homologous match to IL_4V88_394

Geometric discrepancy: 0.1006

The information below is about IL_4V88_394

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.3

Basepair signature

cWW-cWW-tWH-tWH-tHW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

8BN3|1|2|G|143
8BN3|1|2|U|144
8BN3|1|2|A|145
8BN3|1|2|U|146
8BN3|1|2|A|147
8BN3|1|2|A|148
8BN3|1|2|C|149
*
8BN3|1|2|G|165
8BN3|1|2|C|166
8BN3|1|2|U|167
8BN3|1|2|A|168
8BN3|1|2|A|169
8BN3|1|2|U|170
8BN3|1|2|A|171
8BN3|1|2|C|172

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D4

40S ribosomal protein S24-A

Chain S6

Small ribosomal subunit protein eS6A