IL_8BN3_167
3D structure
- PDB id
- 8BN3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S, ES7s delta, eIF5A, Stm1 containing
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- AGGGCAAG*CU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BN3_167 not in the Motif Atlas
- Homologous match to IL_4V88_413
- Geometric discrepancy: 0.0627
- The information below is about IL_4V88_413
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_41203.1
- Basepair signature
- cWW-L-cWW-L-L-R-cSH
- Number of instances in this motif group
- 10
Unit IDs
8BN3|1|2|A|550
8BN3|1|2|G|551
8BN3|1|2|G|552
8BN3|1|2|G|553
8BN3|1|2|C|554
8BN3|1|2|A|555
8BN3|1|2|A|556
8BN3|1|2|G|557
*
8BN3|1|2|C|587
8BN3|1|2|U|588
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain E0
- 40S ribosomal protein S30-A
- Chain S2
- RPS2 isoform 1
- Chain S9
- Small ribosomal subunit protein uS4A
- Chain SM
- STM1 isoform 1
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