IL_8BN3_172
3D structure
- PDB id
- 8BN3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S, ES7s delta, eIF5A, Stm1 containing
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- CGUAG*UCAAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BN3_172 not in the Motif Atlas
- Homologous match to IL_8C3A_428
- Geometric discrepancy: 0.0619
- The information below is about IL_8C3A_428
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_17136.5
- Basepair signature
- cWW-tSH-tHW-tHS-cWW
- Number of instances in this motif group
- 16
Unit IDs
8BN3|1|2|C|627
8BN3|1|2|G|628
8BN3|1|2|U|629
8BN3|1|2|A|630
8BN3|1|2|G|631
*
8BN3|1|2|U|968
8BN3|1|2|C|969
8BN3|1|2|A|970
8BN3|1|2|A|971
8BN3|1|2|G|972
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain C1
- Small ribosomal subunit protein uS17A
- Chain C3
- 40S ribosomal protein S13
- Chain D2
- RPS22A isoform 1
- Chain D3
- 40S ribosomal protein S23-A
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