IL_8BN3_181

3D structure

PDB id

8BN3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S, ES7s delta, eIF5A, Stm1 containing

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CUA*UAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CUA,UAG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BN3_181 not in the Motif Atlas

Geometric match to IL_5D0B_001

Geometric discrepancy: 0.232

The information below is about IL_5D0B_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

8BN3|1|2|C|827
8BN3|1|2|U|828
8BN3|1|2|A|829
*
8BN3|1|2|U|843
8BN3|1|2|A|844
8BN3|1|2|G|845

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C1

Small ribosomal subunit protein uS17A