IL_8BN3_193

3D structure

PDB id

8BN3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S, ES7s delta, eIF5A, Stm1 containing

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BN3_193 not in the Motif Atlas

Homologous match to IL_4V88_440

Geometric discrepancy: 0.0632

The information below is about IL_4V88_440

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

8BN3|1|2|G|1098
8BN3|1|2|G|1099
8BN3|1|2|A|1100
8BN3|1|2|G|1101
8BN3|1|2|U|1102
8BN3|1|2|A|1103
8BN3|1|2|U|1104
8BN3|1|2|G|1105
*
8BN3|1|2|U|1116
8BN3|1|2|G|1117
8BN3|1|2|A|1118
8BN3|1|2|A|1119
8BN3|1|2|A|1120
8BN3|1|2|C|1121

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D3

40S ribosomal protein S23-A

Chain Q1

Large ribosomal subunit protein eL41B