IL_8BN3_207

3D structure

PDB id

8BN3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S, ES7s delta, eIF5A, Stm1 containing

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UGG*CGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BN3_207 not in the Motif Atlas

Homologous match to IL_8C3A_459

Geometric discrepancy: 0.0998

The information below is about IL_8C3A_459

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_63702.3

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

13

Unit IDs

8BN3|1|2|U|1277
8BN3|1|2|G|1278
8BN3|1|2|G|1279
*
8BN3|1|2|C|1310
8BN3|1|2|G|1311
8BN3|1|2|A|1312

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C7

ES17

Chain S0

Small ribosomal subunit protein uS2A

Chain S2

RPS2 isoform 1