3D structure

PDB id
8BN3 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 80S, ES7s delta, eIF5A, Stm1 containing
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
CUA*UGGAAG
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8BN3_212 not in the Motif Atlas
Geometric match to IL_4V88_458
Geometric discrepancy: 0.1434
The information below is about IL_4V88_458
Detailed Annotation
Major groove platform; stack outside cWW
Broad Annotation
Major groove platform
Motif group
IL_58032.1
Basepair signature
cWW-tWH-cWW-L-L-R
Number of instances in this motif group
2

Unit IDs

8BN3|1|2|C|1376
8BN3|1|2|U|1377
8BN3|1|2|A|1378
*
8BN3|1|2|U|1394
8BN3|1|2|G|1395
8BN3|1|2|G|1396
8BN3|1|2|A|1397
8BN3|1|2|A|1398
8BN3|1|2|G|1399

Current chains

Chain 2
18S ribosomal RNA

Nearby chains

Chain C6
40S ribosomal protein S16-A
Chain C7
ES17
Chain S5
Rps5p
Chain SR
Small ribosomal subunit protein RACK1

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