IL_8BN3_217

3D structure

PDB id

8BN3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S, ES7s delta, eIF5A, Stm1 containing

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

8BN3|1|2|C|1624, 8BN3|1|2|A|1753

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BN3_217 not in the Motif Atlas

Geometric match to IL_5J7L_058

Geometric discrepancy: 0.0795

The information below is about IL_5J7L_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

8BN3|1|2|C|1623
8BN3|1|2|C|1624
8BN3|1|2|G|1625
*
8BN3|1|2|C|1751
8BN3|1|2|A|1752
8BN3|1|2|A|1753
8BN3|1|2|G|1754

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D6

RPS26B isoform 1

Chain SM

STM1 isoform 1