IL_8BN3_218

3D structure

PDB id

8BN3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S, ES7s delta, eIF5A, Stm1 containing

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BN3_218 not in the Motif Atlas

Homologous match to IL_4V88_464

Geometric discrepancy: 0.0863

The information below is about IL_4V88_464

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.1

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

8BN3|1|2|G|1625
8BN3|1|2|C|1626
8BN3|1|2|C|1627
8BN3|1|2|C|1628
*
8BN3|1|2|G|1747
8BN3|1|2|U|1748
8BN3|1|2|A|1749
8BN3|1|2|A|1750
8BN3|1|2|C|1751

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain Q1

Large ribosomal subunit protein eL41B

Chain SM

STM1 isoform 1